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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cocoa-(Sca6xH)xC1
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG5
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
QTL
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cocoa - (Sca6xH)xC1 [ View Map Set Info ]
Map Name: LG5
Map Start: 0 cM
Map Stop: 84.2 cM
Features by Type:
25 Marker
5 QTL
30 Total

Map Features

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Items 1 to 25 of 30.       of 2 | Next
Cocoa - (Sca6xH)xC1 - LG5
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
AFLP_SxHxC4/1 Marker 77.9 No other positions
AFLP_SxHxC13/6 Marker 73.5 No other positions
AFLP_SxHxC7/6 Marker 72.7 No other positions
AFLP_SxHxC13/19 Marker 60.7 No other positions
AFLP_SxHxC11/13 Marker 55.9 No other positions
AFLP_SxHxC7/10 Marker 54.7 No other positions
AFLP_SxHxC6/14 Marker 45.7 No other positions
AFLP_SxHxC14/3 Marker 32.9 No other positions
AFLP_SxHxC15/11 Marker 30.7 No other positions
AFLP_SxHxC9/2 Marker 29.2 No other positions
AFLP_SxHxC3/8 Marker 29.1 No other positions
AFLP_SxHxC4/10 Marker 27.9 No other positions
AFLP_SxHxC6/10 Marker 27.3 No other positions
C98 Marker 24.6 Cocoa - test - LG5 C98 Marker 24.4 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG5 C98 Marker 24.4 (cM) Automated name-based View Maps
AFLP_SxHxC10/16 Marker 22.5 No other positions
AFLP_SxHxC10/11 Marker 22.2 No other positions
AFLP_SxHxC13/9 Marker 17.6 No other positions
AFLP_SxHxC14/6 Marker 12.9 No other positions
AFLP_SxHxC12/5 Marker 1.2 No other positions
AFLP_SxHxC1/5 Marker 0 No other positions
mTcCIR36 Marker 84.2 Cocoa - Physical map - Tc05 mTcCIR36 Marker 24,101,763 - 24,108,821 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG5 mTcCIR36 Marker 66 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG5 mTcCIR36 Marker 66 (cM) Automated name-based View Maps
Cocoa - test - LG5 mTcCIR36 Marker 66 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG5 mTcCIR36 Marker 70.7 (cM) Automated name-based View Maps
mTcCIR47 Marker 23.9 Cocoa - Physical map - Tc05 mTcCIR47 Marker 10,191,801 - 10,192,122 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG5 mTcCIR47 Marker 27.7 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG5 mTcCIR47 Marker 27.3 (cM) Automated name-based View Maps
Cocoa - test - LG5 mTcCIR47 Marker 27.7 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG5 mTcCIR47 Marker 27.7 (cM) Automated name-based View Maps
mTcCIR42 Marker 25.1 Cocoa - Physical map - Tc05 mTcCIR42 Marker 11,919,975 - 11,920,770 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG5 mTcCIR42 Marker 27.8 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG5 mTcCIR42 Marker 28.9 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG5 mTcCIR42 Marker 28.9 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG5 mTcCIR42 Marker 27.8 (cM) Automated name-based View Maps
Cocoa - test - LG5 mTcCIR42 Marker 28.9 (cM) Automated name-based View Maps
mTcCIR10 Marker 24.6 Cocoa - ref_UPA402xUF676 - LG5 mTcCIR10 Marker 24.4 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc05 mTcCIR10 Marker 5,936,099 - 5,936,310 (bp) Automated name-based View Maps
Cocoa - test - LG5 mTcCIR10 Marker 24.4 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG5 mTcCIR10 Marker 24.4 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG5 mTcCIR10 Marker 21.9 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG5 mTcCIR10 Marker 24.5 (cM) Automated name-based View Maps
Cocoa - S52xCatongo - LG5A mTcCIR10 Marker 29.5 (cM) Automated name-based View Maps
mTcCIR2 Marker 25 Cocoa - SSR_SNP_consensus_map - LG5 mTcCIR2 Marker 27 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG5 mTcCIR2 Marker 27.9 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG5 mTcCIR2 Marker 27.9 (cM) Automated name-based View Maps
Cocoa - test - LG5 mTcCIR2 Marker 27.9 (cM) Automated name-based View Maps